Hoffmann Research Group

Publications at FLI

2021

  • Implementing FAIR data management within the German Network for Bioinformatics Infrastructure (de.NBI) exemplified by selected use cases.
    Mayer* G, Müller* W, Schork K, Uszkoreit J, Weidemann A, Wittig U, Rey M, Quast C, Felden J, Glöckner FO, Lange M, Arend D, Beier S, Junker A, Scholz U, Schüler D, Kestler HA, Wibberg D, Pühler A, Twardziok S, Eils J, Eils R, Hoffmann S, Eisenacher M, Turewicz M
    Brief Bioinform 2021, 22(5) * equal contribution
  • A perceptually optimised bivariate visualisation scheme for high-dimensional fold-change data
    Müller* A, Lausser* L, Wilhelm A, Ropinski T, Platzer M, Neumann** H, Kestler** HA
    Adv Data Anal Classif 2021, https://doi.org/10.1007/s11634-0 * equal contribution, ** co-corresponding authors
  • Comprehensive Characterization of Multitissue Expression Landscape, Co-Expression Networks and Positive Selection in Pikeperch.
    Nguinkal JA, Verleih M, de Los Ríos-Pérez L, Brunner RM, Sahm A, Bej S, Rebl A, Goldammer T
    Cells 2021, 10(9)
  • Increased longevity due to sexual activity in mole-rats is associated with transcriptional changes in HPA stress axis.
    Sahm* A, Platzer M, Koch P, Henning Y, Bens M, Groth M, Burda H, Begall S, Ting S, Goetz M, Van Daele P, Staniszewska M, Klose J, Costa PF, Hoffmann** S, Szafranski** K, Dammann** P
    Elife 2021, 10, e57843 ** co-senior authors, * corresponding author
  • An analysis of methylome evolution in primates
    Sahm** A, Koch P, Horvath S, Hoffmann** S
    Mol Biol Evol 2021, 38(11), 4700-14 ** co-corresponding authors
  • Loss of hepatic Mboat7 leads to liver fibrosis.
    Thangapandi VR, Knittelfelder O, Brosch M, Patsenker E, Vvedenskaya O, Buch S, Hinz S, Hendricks A, Nati M, Herrmann A, Rekhade DR, Berg T, Matz-Soja M, Huse K, Klipp E, Pauling JK, Wodke JA, Miranda Ackerman J, Bonin Mv, Aigner E, Datz C, von Schönfels W, Nehring S, Zeissig S, Röcken C, Dahl A, Chavakis T, Stickel F, Shevchenko A, Schafmayer C, Hampe J, Subramanian P
    Gut 2021, 70(5), 940-50
  • p63 and p53: Collaborative Partners or Dueling Rivals?
    Woodstock DL, Sammons MA, Fischer M
    Front Cell Dev Biol 2021, 9, 701986

2020

  • Pan-cancer analysis of whole genomes.
    Campbell PJ, Getz G, Korbel Jea, ICGC/TCGA Pan-Cancer Analysis of Whole Genomes Consortium
    Nature 2020, 578(7793), 82-93
  • Dichotomous Impact of Myc on rRNA Gene Activation and Silencing in B Cell Lymphomagenesis.
    Joshi* G, Eberhardt* AO, Lange L, Winkler R, Hoffmann S, Kosan C, Bierhoff H
    Cancers (Basel) 2020, 12(10), E3009. doi: 10.3390/cancers12103 * equal contribution
  • Bashing irreproducibility with shournal
    Kirchner T, Riege K, Hoffmann S
    bioRxiv 2020, https://doi.org/10.1101/2020.08.