Publications at FLI

2023

• Genetic separation of chronic myeloid leukemia stem cells from normal hematopoietic stem cells at single-cell resolution.
  Chen Y, Möbius S, Riege K, Hoffmann S, Hochhaus A, Ernst* T, Rudolph* KL
  Leukemia 2023, 37(7), 1561-6 * equal contribution
  
• Physiological media advance cell culture experiments.
  Fischer M
  Trends Biochem Sci 2023, 48(2), 103-5
  
• The landscape of human p53-regulated long non-coding RNAs reveals critical host gene co-regulation.
  Fischer M, Riege K, Hoffmann S
  MOL ONCOL 2023, 17(7), 1263-79
  
• Comparative analysis of thyroid hormone systems in rodents with subterranean lifestyle.
  Gerhardt P, Begall S, Frädrich C, Renko K, Hildebrandt TB, Holtze S, Heinrich A, Sahm A, Meci X, Köhrle J, Rijntjes E, Henning Y
  Sci Rep 2023, 13(1), 3122
  
• Crafting figures to describe cellular processes.
  Kmiecik** SW, Shi** Q, Chen** YG, Moormann** J, Hildebrandt** TM, Schade** A, Fischer** M, Kim** KQ
  Trends Biochem Sci 2023, 48(6), 491-4 ** co-corresponding authors
  
• Focal structural variants revealed by whole genome sequencing disrupt the histone demethylase KDM4C in B cell lymphomas.
  Lopez C, Schleussner N, Bernhart SH, Kleinheinz K, Sungalee S, Sczakiel HL, Kretzmer H, Toprak UH, Glaser S, Wagener R, Ammerpohl O, Bens S, Giefing M, Sanchez JCG, Apic G, Hubschmann D, Janz M, Kreuz M, Mottok A, Muller JM, Seufert J, Hoffmann S, Korbel JO, Russell RB, Schule R, Trumper L, Klapper W, Radlwimmer B, Lichter P, Kuppers R, Schlesner M, Mathas S, Siebert R
  Haematologica 2023, 108(2), 543-54
  
• Age-Associated Changes in Endothelial Transcriptome and Epigenetic Landscapes Correlate With Elevated Risk of Cerebral Microbleeds.
  Mohan K, Gasparoni G, Salhab A, Orlich MM, Geffers R, Hoffmann S, Adams RH, Walter J, Nordheim A
  J Am Heart Assoc 2023 (epub ahead of print)
  
• The Tgf-β family member Gdf6Y determines the male sex in Nothobranchius furzeri by suppressing oogenesis-inducing genes
  Richter A, Mörl H, Thielemann M, Kleemann M, Geißen R, Schwarz R, Albertz C, Koch P, Petzold A, Groth M, Hartmann N, Herpin A, Englert C
  bioRxiv 2023, 10.1101/2023.05.26.542338
  
• Multi-omics analysis identifies RFX7 targets involved in tumor suppression and neuronal processes.
  Schwab K, Coronel L, Riege K, Sacramento EK, Rahnis N, Häckes D, Cirri E, Groth M, Hoffmann S, Fischer M
  CELL DEATH DISCOV 2023, 9(1), 80
  
• Large-scale benchmarking of circRNA detection tools reveals large differences in sensitivity but not in precision.
  Vromman M, Anckaert J, Bortoluzzi S, Buratin A, Chen CY, Chu Q, Chuang TJ, Dehghannasiri R, Dieterich C, Dong X, Flicek P, Gaffo E, Gu W, He C, Hoffmann S, Izuogu O, Jackson MS, Jakobi T, Lai EC, Nuytens J, Salzman J, Santibanez-Koref M, Stadler P, Thas O, Vanden Eynde E, Verniers K, Wen G, Westholm J, Yang L, Ye CY, Yigit N, Yuan GH, Zhang J, Zhao F, Vandesompele J, Volders PJ
  Nat Methods 2023 (epub ahead of print)