Publications at FLI

2023

• Physiological media advance cell culture experiments.
  Fischer M
  Trends Biochem Sci 2023 (epub ahead of print)
  
• Focal structural variants revealed by whole genome sequencing disrupt the histone demethylase KDM4C in B cell lymphomas.
  Lopez C, Schleussner N, Bernhart SH, Kleinheinz K, Sungalee S, Sczakiel HL, Kretzmer H, Toprak UH, Glaser S, Wagener R, Ammerpohl O, Bens S, Giefing M, Sanchez JCG, Apic G, Hubschmann D, Janz M, Kreuz M, Mottok A, Muller JM, Seufert J, Hoffmann S, Korbel JO, Russell RB, Schule R, Trumper L, Klapper W, Radlwimmer B, Lichter P, Kuppers R, Schlesner M, Mathas S, Siebert R
  Haematologica 2023 (epub ahead of print)
  

2022

• p53-mediated AKT and mTOR inhibition requires RFX7 and DDIT4 and depends on nutrient abundance.
  Coronel* L, Häckes* D, Schwab* K, Riege K, Hoffmann** S, Fischer** M
  Oncogene 2022, 41(7), 1063-9 * equal contribution, ** co-corresponding authors
  
• Synthesizing genome regulation data with vote-counting.
  Fischer M, Hoffmann S
  Trends Genet 2022, 38(12), 1208-16
  
• Coordinating gene expression during the cell cycle.
  Fischer M, Schade AE, Branigan TB, Müller GA, DeCaprio JA
  Trends Biochem Sci 2022, 47(12), 1009-22
  
• TargetGeneReg 2.0: a comprehensive web-atlas for p53, p63, and cell cycle-dependent gene regulation.
  Fischer* M, Schwarz R, Riege K, DeCaprio JA, Hoffmann S
  NAR Cancer 2022, 4(1), zcac009 * corresponding author
  
• LINC00892 Is an lncRNA Induced by T Cell Activation and Expressed by Follicular Lymphoma-Resident T Helper Cells.
  Iaccarino I, Mourtada F, Reinke S, Patil P, Doose G, Monaco G, Hoffmann S, Siebert R, Klapper W
  Noncoding RNA 2022, 8(3)
  
• Taz protects hematopoietic stem cells from an aging-dependent decrease in PU.1 activity.
  Kim* KM, Mura-Meszaros* A, Tollot* M, Krishnan MS, Gründl M, Neubert L, Groth M, Rodriguez-Fraticelli A, Svendsen AF, Campaner S, Andreas N, Kamradt T, Hoffmann S, Camargo FD, Heidel FH, Bystrykh LV, de Haan G, von Eyss B
  Nat Commun 2022, 13(1), 5187 * equal contribution
  
• Multi-omics analysis identifies RFX7 targets involved in tumor suppression and neuronal processes
  Schwab K, Coronel L, Riege K, Sacramento EK, Rahnis N, Häckes D, Cirri E, Groth M, Hoffmann S, Fischer M
  bioRxiv 2022, https://www.doi.org/10.1101/2022
  
• Locus-specific expression analysis of transposable elements.
  Schwarz R, Koch P, Wilbrandt* J, Hoffmann* S
  Brief Bioinform 2022, 23(1), bbab417 * equal contribution