Hoffmann Research Group

Publications at FLI

UV laser crosslinking uncovers novel DNA-binding pattern of CTCF*
Stanko C, Gupse Özcan S, Stengel S, Szymański Ł, Steube A, Fischer M, Brioli A, Schenk T
bioRxiv 2025, https://doi.org/10.1101/2025.05.
Dynamics of HBV biomarkers during nucleos(t)ide analog treatment: A 14-year study.
van Bömmel F, Degasperi E, van Bömmel A, Facchetti F, Sambarino D, Deichsel D, Brehm J, Kamga Wouambo R, Maier M, Pfefferkorn M, Berg T, Lampertico P
Hepatol Commun 2025, 9(6)
Author Correction: Large-scale benchmarking of circRNA detection tools reveals large differences in sensitivity but not in precision.
Vromman M, Anckaert J, Bortoluzzi S, Buratin A, Chen CY, Chu Q, Chuang TJ, Dehghannasiri R, Dieterich C, Dong X, Flicek P, Gaffo E, Gu W, He C, Hoffmann S, Izuogu O, Jackson MS, Jakobi T, Lai EC, Nuytens J, Salzman J, Santibanez-Koref M, Stadler P, Thas O, Vanden Eynde E, Verniers K, Wen G, Westholm J, Yang L, Ye CY, Yigit N, Yuan GH, Zhang J, Zhao F, Vandesompele J, Volders PJ
Nat Methods 2025 (epub ahead of print)
Gene regulation by convergent promoters.
Wiechens E, Vigliotti* F, Siniuk* K, Schwarz R, Schwab K, Riege K, van Bömmel A, Görlich I, Bens M, Sahm A, Groth M, Sammons MA, Loewer A, Hoffmann S, Fischer M
Nat Genet 2025, 57(1), 206-17 * equal contribution

The Aging Synapse: An Integrated Proteomic And Transcriptomic Analysis
Caterino* C, Ugolini* M, Durso W, Jevdokimenko K, Groth M, Riege K, Görlach M, Fornasiero E, Ori A, Hoffmann S, Cellerino A
bioRxiv 2024, https://doi.org/10.1101/2024.12. * equal contribution
Gene regulation by the tumor suppressor p53 - The omics era.
Fischer M
Bba-Rev Cancer 2024, 1879(4), 189111
Genomregulation durch Tumorsuppressoren und Onkoproteine
Fischer M
BIOspektrum 2024, 30, 123
Determinants of p53 DNA binding, gene regulation, and cell fate decisions.
Fischer** * M, Sammons** * MA
Cell Death Differ 2024, 31(7), 836-43 * equal contribution, ** co-corresponding authors
Systematic computational hunting for small RNAs derived from ncRNAs during dengue virus infection in endothelial HMEC-1 cells.
Gutierrez-Diaz A, Hoffmann S, Gallego-Gómez JC, Bermudez-Santana CI
Front Bioinform 2024, 4, 1293412
Bashing irreproducibility with shournal.
Kirchner T, Riege K, Hoffmann S
Sci Rep 2024, 14(1), 4872