Publications

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  • Identifying Cell-Type-Specific Metabolic Signatures Using Transcriptome and Proteome Analyses.
    Gebert N, Rahman S, Lewis CA, Ori** A, Cheng** CW
    Curr Protoc 2021, 1(9), e245 ** co-corresponding authors
  • RNA:DNA triple helices: from peculiar structures to pervasive chromatin regulators.
    Greifenstein* AA, Jo* S, Bierhoff H
    Essays Biochem 2021, 65(4), 731-40 * equal contribution
  • Regeneration in starved planarians depends on TRiC/CCT subunits modulating the unfolded protein response.
    Gutiérrez-Gutiérrez* Ó, Felix* DA, Salvetti A, Amro EM, Thems A, Pietsch S, Koeberle A, Rudolph KL, González-Estévez C
    EMBO Rep 2021, 22(8), e52905 * equal contribution
  • High Yap and Mll1 promote a persistent regenerative cell state induced by Notch signaling and loss of p53.
    Heuberger J, Grinat J, Kosel F, Liu L, Kunz S, Vidal RO, Keil M, Haybaeck J, Robine S, Louvard D, Regenbrecht C, Sporbert A, Sauer S, von Eyss B, Sigal M, Birchmeier W
    Proc Natl Acad Sci U S A 2021, 118(22)
  • Alternative Animal Models of Aging Research
    Holtze S, Gorshkova E, Braude S, Cellerino A, Dammann P, Hildebrandt TB, Hoeflich A, Hoffmann S, Koch P, Terzibasi Tozzini E, Skulachev M, Skulachev VP, Sahm A
    Front Mol Biosci 2021, 8, doi: 10.3389/fmolb.2021.660959.
  • PoSeiDon: a Nextflow pipeline for the detection of evolutionary recombination events and positive selection.
    Hölzer M, Marz M
    Bioinformatics 2021, 37(7), 1018-20
  • The Role of MacroH2A Histone Variants in Cancer.
    Hsu CJ, Meers O, Buschbeck M, Heidel FH
    Cancers (Basel) 2021, 13(12)
  • Mutational mechanisms shaping the coding and noncoding genome of germinal center derived B-cell lymphomas.
    Hübschmann D, Kleinheinz K, Wagener R, Bernhart SH, López C, Toprak UH, Sungalee S, Ishaque N, Kretzmer H, Kreuz M, Waszak SM, Paramasivam N, Ammerpohl O, Aukema SM, Beekman R, Bergmann AK, Bieg M, Binder H, Borkhardt A, Borst C, Brors B, Bruns P, Carrillo de Santa Pau E, Claviez A, Doose G, Haake A, Karsch D, Haas S, Hansmann ML, Hoell JI, Hovestadt V, Huang B, Hummel M, Jäger-Schmidt C, Kerssemakers JNA, Korbel JO, Kube D, Lawerenz C, Lenze D, Martens JHA, Ott G, Radlwimmer B, Reisinger E, Richter J, Rico D, Rosenstiel P, Rosenwald A, Schillhabel M, Stilgenbauer S, Stadler PF, Martín-Subero JI, Szczepanowski M, Warsow G, Weniger MA, Zapatka M, Valencia A, Stunnenberg HG, Lichter P, Möller P, Loeffler M, Eils R, Klapper W, Hoffmann S, Trümper L, ICGC MMML-Seq consortium, ICGC DE-Mining consortium, BLUEPRINT consortium, Küppers R, Schlesner M, Siebert R
    Leukemia 2021, 35(7), 2002-16 published during change of institution
  • Single Myofiber Culture Assay for the Assessment of Adult Muscle Stem Cell Functionality Ex Vivo.
    Hüttner SS, Hayn C, Ahrens HE, Schmidt M, Henze H, von Maltzahn J
    J Vis Exp 2021
  • Fetal-like reversion in the regenerating intestine is regulated by mesenchymal Asporin
    Iqbal S, Andersson S, Nestaite E, Pentinmikko N, Kumar A, Borshagovski D, Webb A, Saarinen T, Juuti A, Ori A, Varjosalo M, Pietiläinen KH, Jensen KB, Oudhoff M, Katajisto P
    bioRxiv 2021, https://doi.org/10.1101/2021.06.